Add a logger assembly and split the main assembly in two : the UI and the parasitemia...

[master-thesis.git] / Parasitemia / Parasitemia / Config.fs

diff --git a/Parasitemia/Parasitemia/Config.fs b/Parasitemia/Parasitemia/Config.fs
deleted file mode 100644 (file)
index e7deb61..0000000
--- a/Parasitemia/Parasitemia/Config.fs
+++ /dev/null
@@ -1,121 +0,0 @@
-module Config
-
-open System
-
-open Const
-open UnitsOfMeasure
-
-type Debug =
-    | DebugOff
-    | DebugOn of string // Output directory.
-
-type Parameters = {
-    rbcDiameter: float<μm>
-    resolution: float<ppi>
-
-    ratioAreaPaleCenter: float32 // The area of the second opening is 'ratioSecondAreaOpen' * mean RBC area. It's applied only if greater than 'initialAreaOpen'.
-
-    granulometryRange: float32 // The radius will be seeked from radius - granulometryRange * radius to radius + granulometryRange * radius.
-
-    minRbcRadius: float32 // Factor of the mean RBC radius.
-    maxRbcRadius: float32 // Factor of the mean RBC radius.
-
-    LPFStandardDeviation: float<μm> // Sigma parameter of the gaussian to remove the high frequency noise.
-
-    // Ellipse.
-    factorNbPick: float // The number of computed ellipse per edge pixel.
-
-    // Parasites detection.
-    darkStainLevel: float // Lower -> more sensitive. Careful about illumination on the borders.
-    maxDarkStainRatio: float // When a cell must own less than this ratio to be a RBC.
-
-    stainArea: float32 // Factor of a RBC area. 0.5 means the half of RBC area.
-    stainSensitivity: float // between 0 (the least sensitive) and 1 (the most sensitive).
-    maxStainRatio: float // A cell must own less than this ratio to be a RBC.
-
-    infectionArea: float32 // Factor of a RBC area. 0.5 means the half of RBC area.
-    infectionSensitivity: float // between 0 (the least sensitive) and 1 (the most sensitive).
-
-    standardDeviationMaxRatio: float // The standard deviation of the pixel values of a cell can't be greater than standardDeviationMaxRatio * global standard deviation
-    minimumCellAreaFactor: float32 // Factor of the mean RBC area. A cell with an area below this will be rejected.
-}
-
-let defaultParameters = {
-    rbcDiameter = 8.<μm>
-    resolution = 220.e3<ppi> // Correspond to 50X.
-
-    ratioAreaPaleCenter = 1.f / 3.f // The ratio between an RBC area and the area of the its pale center.
-
-    granulometryRange = 0.5f
-
-    minRbcRadius = -0.3f
-    maxRbcRadius = 0.3f
-
-    LPFStandardDeviation = 0.2<μm> // 8.5e-6<inch>.
-
-    factorNbPick = 1.0
-
-    darkStainLevel = 0.25 // 0.3
-    maxDarkStainRatio = 0.1 // 10 %
-
-    infectionArea = 0.012f // 1.2 %
-    infectionSensitivity = 0.9
-
-    stainArea = 0.08f // 8 %
-    stainSensitivity = 0.9
-    maxStainRatio = 0.12 // 12 %
-
-    standardDeviationMaxRatio = 0.5 // 0.5
-    minimumCellAreaFactor = 0.4f }
-
-type RBCRadius (radius: float32, parameters: Parameters) =
-    member this.Pixel = radius
-    member this.μm : float<μm> =
-        1.<px> * (float radius) / parameters.resolution |> inchToμm
-
-    member this.Min = radius + parameters.minRbcRadius * radius
-    member this.Max = radius + parameters.maxRbcRadius * radius
-
-    member this.Area = PI * radius ** 2.f
-    member this.MinArea = parameters.minimumCellAreaFactor * radius
-
-    member this.InfectionArea = parameters.infectionArea * this.Area
-    member this.StainArea = parameters.stainArea * this.Area
-
-    override this.ToString() =
-        sprintf "%d px (%.1f μm)" (Utils.roundInt <| 2.f * radius) (2. * this.μm)
-
-type Config (param: Parameters) =
-    let RBCadiusInPixels (rbcDiameter: float<μm>) (resolution: float<ppi>) : float32 =
-        let rbcRadiusInch: float<inch> = (μmToInch rbcDiameter) / 2.
-        let rbcRadiusPx: float<px> = resolution * rbcRadiusInch
-        float32 rbcRadiusPx
-
-    let mutable parameters: Parameters = param
-    let mutable rbcRadiusByResolution = RBCRadius(RBCadiusInPixels parameters.rbcDiameter parameters.resolution, parameters)
-    let mutable rbcRadius = RBCRadius(0.f, parameters)
-
-    new () = Config(defaultParameters)
-
-    member this.Parameters
-        with get() = parameters
-        and set(param) =
-            parameters <- param
-            rbcRadiusByResolution <- RBCRadius(RBCadiusInPixels parameters.rbcDiameter parameters.resolution, param)
-            rbcRadius <- RBCRadius(rbcRadius.Pixel, param)
-
-    member val Debug = DebugOff with get, set
-
-    member this.LPFStandardDeviation =
-        let stdDeviation: float<px> = (μmToInch parameters.LPFStandardDeviation) * parameters.resolution
-        float stdDeviation
-
-    member this.RBCRadiusByResolution = rbcRadiusByResolution
-    member this.RBCRadius = rbcRadius
-
-    member this.SetRBCRadius (radiusPixel: float32) =
-        rbcRadius <- RBCRadius(radiusPixel, parameters)
-
-    member this.Copy () =
-        this.MemberwiseClone() :?> Config
-