* Add the analysis window.

[master-thesis.git] / Parasitemia / Parasitemia / Config.fs

diff --git a/Parasitemia/Parasitemia/Config.fs b/Parasitemia/Parasitemia/Config.fs
index 3e3a06c..e583160 100644 (file)
--- a/Parasitemia/Parasitemia/Config.fs
+++ b/Parasitemia/Parasitemia/Config.fs
@@ -2,48 +2,54 @@
 
 open System
 
+open Const
+
 type Debug =
     | DebugOff
     | DebugOn of string // Output directory.
 
 type Parameters = {
-    scale: float
+    initialAreaOpen: int // Area of the first initial opening to remove the central illumination of RBC.
+    ratioSecondAreaOpen: float32 // The area of the second opening is 'ratioSecondAreaOpen' * mean RBC area. It's applied only if greater than 'initialAreaOpen'.
 
-    minRbcRadius: float
-    maxRbcRadius: float
+    minRbcRadius: float32 // Factor of the mean RBC radius.
+    maxRbcRadius: float32 // Factor of the mean RBC radius.
 
-    preFilterSigma: float
+    preFilterSigma: float // To remove the high frequency noise.
 
     // Ellipse.
-    factorNbPick: float
-    factorWindowSize: float // factor of 'maxRBCSize'.
+    factorNbPick: float // The number of computed ellipse per edge pixel.
 
     // Parasites detection.
-    darkStainLevel: float
-    maxDarkStainRatio: float
+    darkStainLevel: float // Lower -> more sensitive. Careful about illumination on the borders.
+    maxDarkStainRatio: float // When a cell must own less than this ratio to be a RBC.
 
-    stainArea: float // Factor of a RBC area. 0.5 means the half of RBC area.
-    stainLevel: float // [0, 1]
-    maxStainRatio: float // [0, 1]
+    stainArea: float32 // Factor of a RBC area. 0.5 means the half of RBC area.
+    stainLevel: float // > 1
+    maxStainRatio: float // When a cell must own less than this ratio to be a RBC.
 
-    infectionArea: float // Factor of a RBC area. 0.5 means the half of RBC area.
-    infectionLevel: float // [0, 1]
-    parasitePixelsRequired: int
+    infectionArea: float32 // Factor of a RBC area. 0.5 means the half of RBC area.
+    infectionLevel: float // > 1
 
     standardDeviationMaxRatio: float // The standard deviation of the pixel values of a cell can't be greater than standardDeviationMaxRatio * global standard deviation
-    minimumCellArea: float // Factor of RBC area.
+    minimumCellAreaFactor: float32 // Factor of the mean RBC area.
 }
 
 type Config (param: Parameters) =
     member this.Parameters = param
     member val Debug = DebugOff with get, set
-    member val RBCRadius = 30. with get, set
+
+    // Mean RBC radius.
+    member val RBCRadius = 30.f with get, set
 
     member this.RBCMinRadius = this.RBCRadius + param.minRbcRadius * this.RBCRadius
     member this.RBCMaxRadius = this.RBCRadius + param.maxRbcRadius * this.RBCRadius
 
-    member this.RBCArea = Math.PI * this.RBCRadius ** 2.0
-    member this.RBCMinArea = param.minimumCellArea * this.RBCArea
+    member this.RBCArea = PI * this.RBCRadius ** 2.f
+    member this.RBCMinArea = param.minimumCellAreaFactor * this.RBCArea
 
     member this.InfectionArea = param.infectionArea * this.RBCArea
     member this.StainArea = param.stainArea * this.RBCArea
+
+    member this.Copy () =
+        this.MemberwiseClone() :?> Config