Parasitemia/ParasitemiaUI/State.fs

   1 module ParasitemiaUI.State
   2
   3 open System
   4 open System.Collections.Generic
   5 open System.Windows
   6
   7 open Emgu.CV
   8 open Emgu.CV.Structure
   9
  10 open Types
  11
  12 type State (defaultConfig: ParasitemiaCore.Config.Config) =
  13     let sourceImages = List<SourceImage>()
  14     let mutable alteredSinceLastSave = false
  15     let mutable patientID = ""
  16
  17     member this.AlteredSinceLastSave = alteredSinceLastSave
  18     member val CurrentImage: SourceImage option = None with get, set
  19     member val FilePath: string = "" with get, set
  20
  21     member this.PatientID
  22         with get () : string = patientID
  23         and set id =
  24             if id <> patientID
  25             then
  26                 alteredSinceLastSave <- true
  27                 patientID <- id
  28
  29     member this.ImageParasitemia (srcImg: SourceImage) : int * int =
  30         List.length srcImg.rbcs,
  31         srcImg.rbcs |> List.fold (fun nbInfected rbc -> if rbc.infected then nbInfected + 1 else nbInfected) 0
  32
  33     member this.ImageNbManuallyChangedRBC (srcImg: SourceImage) (setAsInfected: bool) : int * int =
  34         List.length srcImg.rbcs,
  35         srcImg.rbcs |> List.fold (fun nb rbc -> if rbc.setManually && rbc.infected = setAsInfected then nb + 1 else nb) 0
  36
  37     member this.ImageNbManuallyChangedRBCStr (srcImg: SourceImage) (setAsInfected: bool) : string =
  38         Utils.percentText (this.ImageNbManuallyChangedRBC srcImg setAsInfected)
  39
  40     member this.ImageManuallyChangedRBC (srcImg: SourceImage) (setAsInfected: bool) : int seq =
  41         query {
  42             for rbc in srcImg.rbcs do
  43             where (rbc.setManually && rbc.infected = setAsInfected)
  44             select rbc.num }
  45
  46     member this.ImageManuallyChangedRBCStr (srcImg: SourceImage) (setAsInfected: bool) : string =
  47         let listStr = Utils.listAsStr <| this.ImageManuallyChangedRBC srcImg setAsInfected
  48         if listStr = ""
  49         then ""
  50         else "[" + listStr + "]"
  51
  52     member this.GlobalParasitemia : int * int =
  53         sourceImages
  54         |> Seq.fold (fun (nbTotal, nbTotalInfected) srcImg ->
  55                         let nb, nbInfected = this.ImageParasitemia srcImg
  56                         nbTotal + nb, nbTotalInfected + nbInfected) (0, 0)
  57
  58
  59     member this.SetAsInfected (rbc: RBC) (infected: bool) =
  60         if infected <> rbc.infected
  61         then
  62             alteredSinceLastSave <- true
  63             rbc.infected <- infected
  64             rbc.setManually <- not rbc.setManually
  65
  66     /// <summary>
  67     /// Save the current state. 'FilePath' must have been defined.
  68     /// </summary>
  69     /// <exception cref="System.IOException">If the file cannot be saved</exception>
  70     member this.Save () =
  71         let data = { PiaZ.DocumentData.patientID = this.PatientID; PiaZ.DocumentData.images = List.ofSeq sourceImages }
  72         PiaZ.save this.FilePath data
  73         alteredSinceLastSave <- false
  74
  75     /// <summary>
  76     /// Load the current state. 'FilePath' must have been defined.
  77     /// </summary>
  78     /// <exception cref="System.IOException">If the file cannot be loaded</exception>
  79     member this.Load () =
  80         let data = PiaZ.load this.FilePath defaultConfig
  81         this.PatientID <- data.patientID
  82         sourceImages.Clear()
  83         sourceImages.InsertRange(0, data.images)
  84         this.CurrentImage <- if sourceImages.Count > 0 then Some sourceImages.[0] else None
  85         alteredSinceLastSave <- false
  86
  87     /// <summary>
  88     /// </summary>
  89     /// <exception cref="System.IOException">If the image cannot be read</exception>
  90     member this.AddSourceImage (filePath: string) (defaultConfig: ParasitemiaCore.Config.Config) : SourceImage =
  91         let srcImg =
  92             { num = sourceImages.Count + 1
  93               name = System.IO.FileInfo(filePath).Name
  94               config = defaultConfig.Copy()
  95               dateLastAnalysis = DateTime(0L)
  96               rbcs = []
  97               img = new Image<Bgr, byte>(filePath)
  98               healthyRBCBrightness = 1.f
  99               infectedRBCBrightness = 1.f }
 100
 101         sourceImages.Add(srcImg)
 102         if sourceImages.Count = 1
 103         then this.CurrentImage <- Some sourceImages.[0]
 104         alteredSinceLastSave <- true
 105         srcImg
 106
 107     member this.RemoveSourceImage (srcImg: SourceImage) =
 108         let isCurrent =
 109             match this.CurrentImage with
 110             | Some srcImg' -> srcImg = srcImg'
 111             | _ -> false
 112
 113         if sourceImages.Remove(srcImg)
 114         then
 115             alteredSinceLastSave <- true
 116             if isCurrent
 117             then
 118                 this.CurrentImage <- if sourceImages.Count > 0 then Some sourceImages.[0] else None
 119         // Re-numbered the images.
 120         sourceImages |> Seq.iteri (fun i srcImg -> srcImg.num <- i + 1)
 121
 122     member this.SetName (srcImg: SourceImage) (name: string) =
 123         if name <> srcImg.name
 124         then
 125             srcImg.name <- name
 126             alteredSinceLastSave <- true
 127
 128     member this.SetResult (imgNum: int) (cells: ParasitemiaCore.Types.Cell list) =
 129         let sourceImage = sourceImages.Find(fun srcImg -> srcImg.num = imgNum)
 130
 131         let w = sourceImage.img.Width
 132         let h = sourceImage.img.Height
 133
 134         sourceImage.dateLastAnalysis <- DateTime.UtcNow
 135
 136         // To match with previously manually altered RBC.
 137         let manuallyAlteredPreviousRBCS = sourceImage.rbcs |> List.filter (fun rbc -> rbc.setManually)
 138         let tolerance = (float sourceImage.config.RBCRadius.Pixel) * 0.5 // +/-.
 139         let getPreviousManuallyAlteredRBC (center: Point) : RBC option =
 140             manuallyAlteredPreviousRBCS |> List.tryFind (fun rbc -> rbc.center.X > center.X - tolerance && rbc.center.X < center.X + tolerance &&
 141                                                                     rbc.center.Y > center.Y - tolerance && rbc.center.Y < center.Y + tolerance)
 142
 143         sourceImage.rbcs <- cells
 144             |> List.filter (fun cell -> match cell.cellClass with ParasitemiaCore.Types.HealthyRBC | ParasitemiaCore.Types.InfectedRBC -> true | _ -> false )
 145             |> List.sortByDescending (fun cell -> cell.nucleusArea, (w - cell.center.X) + (h - cell.center.Y))
 146             |> List.mapi (fun i cell ->
 147                 let center = Point(float cell.center.X, float cell.center.Y)
 148                 let infected, setManually =
 149                     let infected = cell.cellClass = ParasitemiaCore.Types.InfectedRBC
 150                     match getPreviousManuallyAlteredRBC center with
 151                     | Some rbc when rbc.infected <> infected -> rbc.infected, true // If it has been previously manually changed and now match the result, the manually flag is removed.
 152                     | _ -> infected, false
 153
 154                 { num = i + 1
 155                   infected = infected
 156                   setManually = setManually
 157                   center = center
 158                   size = Size(float cell.elements.Width, float cell.elements.Height)
 159                   infectedArea = cell.nucleusArea })
 160
 161         alteredSinceLastSave <- true
 162
 163     member this.SourceImages : SourceImage seq =
 164         sourceImages :> SourceImage seq
 165
 166     member this.Reset () =
 167         this.PatientID <- ""
 168         this.FilePath <- ""
 169         this.CurrentImage <- None
 170         sourceImages.Clear()
 171         alteredSinceLastSave <- false