open System
open System.IO
-open System.Windows
-open System.Windows.Media
-open System.Windows.Markup
-open System.Windows.Shapes
-open System.Windows.Controls
-open System.Drawing
-open System.Diagnostics
open System.Threading
-open FSharp.Collections.ParallelSeq
-
open Emgu.CV
open Emgu.CV.Structure
-open Emgu.CV.WPF
open Config
-let display (window : Views.MainWindow) (img : IImage) =
- let imgControl = window.Root.FindName("img") :?> Controls.Image
- imgControl.Source <- BitmapSourceConvert.ToBitmapSource(img)
-
-let log (window : Views.MainWindow) (mess : string) =
- let txtLog = window.Root.FindName("txtLog") :?> Controls.TextBlock
- txtLog.Text <- txtLog.Text + mess + "\n"
-
-
type Input =
| File of string
| Dir of string
[<EntryPoint>]
+[<STAThread()>]
let main args =
match parseArgs args with
| mode, debug ->
- let config =
- Config(
- { scale = 1.
-
- initialAreaOpen = 2000
-
- minRbcRadius = -0.32f
- maxRbcRadius = 0.32f
-
- preFilterSigma = 1.7 // 1.5
-
- factorNbPick = 1.0
-
- darkStainLevel = 0.22 // Lower -> more sensitive. 0.3. Careful about illumination on the borders.
- maxDarkStainRatio = 0.1 // 10 %
-
- infectionArea = 0.012f // 1.2 %
- infectionLevel = 1.12 // Lower -> more sensitive.
-
- stainArea = 0.08f // 8 %
- stainLevel = 1.1 // Lower -> more sensitive.
- maxStainRatio = 0.12 // 12 %
-
- standardDeviationMaxRatio = 0.5 // 0.55
- minimumCellArea = 0.5f })
+ let config = Config(defaultParameters)
match mode with
| CmdLine (input, output) ->
use resultFile = new StreamWriter(new FileStream(Path.Combine(output, "results.txt"), FileMode.Append, FileAccess.Write))
//try
- let images = seq { for file in files -> Path.GetFileNameWithoutExtension(FileInfo(file).Name), new Image<Bgr, byte>(file) }
+ let images = [ for file in files -> Path.GetFileNameWithoutExtension(FileInfo(file).Name), config.Copy(), new Image<Bgr, byte>(file) ]
- let nbConcurrentTaskLimit = 4
- let n = Environment.ProcessorCount
Utils.logTime "Whole analyze" (fun () ->
- let results =
- images
- |> PSeq.map (fun (id, img) -> id, ImageAnalysis.doAnalysis img id (config.Copy()))
- |> PSeq.withDegreeOfParallelism (if n > nbConcurrentTaskLimit then nbConcurrentTaskLimit else n)
+ let results = ImageAnalysis.doMultipleAnalysis images None
for id, cells in results do
let total, infected = Utils.countCells cells
0
| Window ->
- let app = new Application()
- let mainWindow = Views.MainWindow()
-
- if debug
- then
- config.Debug <- DebugOn "."
+ (*let display (window : Views.MainWindow) (img : IImage) =
+ let imgControl = window.Root.FindName("img") :?> Controls.Image
+ imgControl.Source <- BitmapSourceConvert.ToBitmapSource(img)
- Utils.log <- (fun m -> log mainWindow m)
+ let log (window : Views.MainWindow) (mess : string) =
+ let txtLog = window.Root.FindName("txtLog") :?> Controls.TextBlock
+ txtLog.Text <- txtLog.Text + mess + "\n"*)
- //display mainWindow img
- mainWindow.Root.Show()
- app.Run()
+ if debug then config.Debug <- DebugOn "."
+ GUI.Main.run config