module ParasitemiaCore.Edges
-open System
open System.Drawing
open System.Collections.Generic
/// The thresholds are automatically defined with otsu on gradient magnitudes.
/// </summary>
/// <param name="img"></param>
-let find (img: Image<Gray, float32>) : Matrix<byte> * Matrix<float32> * Matrix<float32> =
+let find (img : Image<Gray, float32>) : Matrix<byte> * Matrix<float32> * Matrix<float32> =
let w = img.Width
let h = img.Height
use sobelKernel =
- new Matrix<float32>(array2D [[ -1.0f; 0.0f; 1.0f ]
- [ -2.0f; 0.0f; 2.0f ]
- [ -1.0f; 0.0f; 1.0f ]])
+ new Matrix<float32> (
+ array2D [[ -1.0f; 0.0f; 1.0f ]
+ [ -2.0f; 0.0f; 2.0f ]
+ [ -1.0f; 0.0f; 1.0f ]]
+ )
- let xGradient = new Matrix<float32>(img.Size)
- let yGradient = new Matrix<float32>(img.Size)
- CvInvoke.Filter2D(img, xGradient, sobelKernel, Point(1, 1))
- CvInvoke.Filter2D(img, yGradient, sobelKernel.Transpose(), Point(1, 1))
+ let xGradient = new Matrix<float32> (img.Size)
+ let yGradient = new Matrix<float32> (img.Size)
+ CvInvoke.Filter2D (img, xGradient, sobelKernel, Point (1, 1))
+ CvInvoke.Filter2D (img, yGradient, sobelKernel.Transpose (), Point (1, 1))
- use magnitudes = new Matrix<float32>(xGradient.Size)
- use angles = new Matrix<float32>(xGradient.Size)
- CvInvoke.CartToPolar(xGradient, yGradient, magnitudes, angles) // Compute the magnitudes and angles. The angles are between 0 and 2 * pi.
+ use magnitudes = new Matrix<float32> (xGradient.Size)
+ use angles = new Matrix<float32> (xGradient.Size)
+ CvInvoke.CartToPolar (xGradient, yGradient, magnitudes, angles) // Compute the magnitudes and angles. The angles are between 0 and 2 * pi.
let thresholdHigh, thresholdLow =
let threshold, _, _ = otsu (histogramMat magnitudes 300)
threshold + (sensibilityHigh * threshold), threshold - (sensibilityLow * threshold)
// Non-maximum suppression.
- use nms = new Matrix<byte>(xGradient.Size)
+ use nms = new Matrix<byte> (xGradient.Size)
let nmsData = nms.Data
let anglesData = angles.Data
let xGradientData = xGradient.Data
let yGradientData = yGradient.Data
- for i in 1 .. h - 2 do
- for j in 1 .. w - 2 do
+ for i = 1 to h - 2 do
+ for j = 1 to w - 2 do
let vx = xGradientData.[i, j]
let vy = yGradientData.[i, j]
- if vx <> 0.f || vy <> 0.f
- then
+ if vx <> 0.f || vy <> 0.f then
let angle = anglesData.[i, j]
let vx', vy' = abs vx, abs vy
let ratio2 = if vx' > vy' then vy' / vx' else vx' / vy'
let ratio1 = 1.f - ratio2
- let mNeigbors (sign: int) : float32 =
- if angle < PI / 4.f
- then ratio1 * magnitudesData.[i, j + sign] + ratio2 * magnitudesData.[i + sign, j + sign]
- elif angle < PI / 2.f
- then ratio2 * magnitudesData.[i + sign, j + sign] + ratio1 * magnitudesData.[i + sign, j]
- elif angle < 3.f * PI / 4.f
- then ratio1 * magnitudesData.[i + sign, j] + ratio2 * magnitudesData.[i + sign, j - sign]
- elif angle < PI
- then ratio2 * magnitudesData.[i + sign, j - sign] + ratio1 * magnitudesData.[i, j - sign]
- elif angle < 5.f * PI / 4.f
- then ratio1 * magnitudesData.[i, j - sign] + ratio2 * magnitudesData.[i - sign, j - sign]
- elif angle < 3.f * PI / 2.f
- then ratio2 * magnitudesData.[i - sign, j - sign] + ratio1 * magnitudesData.[i - sign, j]
- elif angle < 7.f * PI / 4.f
- then ratio1 * magnitudesData.[i - sign, j] + ratio2 * magnitudesData.[i - sign, j + sign]
- else ratio2 * magnitudesData.[i - sign, j + sign] + ratio1 * magnitudesData.[i, j + sign]
+ let mNeigbors (sign : int) : float32 =
+ if angle < PI / 4.f then
+ ratio1 * magnitudesData.[i, j + sign] + ratio2 * magnitudesData.[i + sign, j + sign]
+ elif angle < PI / 2.f then
+ ratio2 * magnitudesData.[i + sign, j + sign] + ratio1 * magnitudesData.[i + sign, j]
+ elif angle < 3.f * PI / 4.f then
+ ratio1 * magnitudesData.[i + sign, j] + ratio2 * magnitudesData.[i + sign, j - sign]
+ elif angle < PI then
+ ratio2 * magnitudesData.[i + sign, j - sign] + ratio1 * magnitudesData.[i, j - sign]
+ elif angle < 5.f * PI / 4.f then
+ ratio1 * magnitudesData.[i, j - sign] + ratio2 * magnitudesData.[i - sign, j - sign]
+ elif angle < 3.f * PI / 2.f then
+ ratio2 * magnitudesData.[i - sign, j - sign] + ratio1 * magnitudesData.[i - sign, j]
+ elif angle < 7.f * PI / 4.f then
+ ratio1 * magnitudesData.[i - sign, j] + ratio2 * magnitudesData.[i - sign, j + sign]
+ else
+ ratio2 * magnitudesData.[i - sign, j + sign] + ratio1 * magnitudesData.[i, j + sign]
let m = magnitudesData.[i, j]
- if m >= thresholdLow && m > mNeigbors 1 && m > mNeigbors -1
- then
+ if m >= thresholdLow && m > mNeigbors 1 && m > mNeigbors -1 then
nmsData.[i, j] <- 1uy
// suppressMConnections nms // It's not helpful for the rest of the process (ellipse detection).
- IO.saveMat magnitudes "magnitudes.png"
- IO.saveMat nms "nms.png"
-
- let edges = new Matrix<byte>(xGradient.Size)
+ let edges = new Matrix<byte> (xGradient.Size)
let edgesData = edges.Data
// Hysteresis thresholding.
- let toVisit = Stack<Point>()
- for i in 0 .. h - 1 do
- for j in 0 .. w - 1 do
- if nmsData.[i, j] = 1uy && magnitudesData.[i, j] >= thresholdHigh
- then
+ let toVisit = Stack<Point> ()
+ for i = 0 to h - 1 do
+ for j = 0 to w - 1 do
+ if nmsData.[i, j] = 1uy && magnitudesData.[i, j] >= thresholdHigh then
nmsData.[i, j] <- 0uy
- toVisit.Push(Point(j, i))
+ toVisit.Push (Point (j, i))
while toVisit.Count > 0 do
- let p = toVisit.Pop()
+ let p = toVisit.Pop ()
edgesData.[p.Y, p.X] <- 1uy
- for i' in -1 .. 1 do
- for j' in -1 .. 1 do
- if i' <> 0 || j' <> 0
- then
+ for i' = -1 to 1 do
+ for j' = -1 to 1 do
+ if i' <> 0 || j' <> 0 then
let ni = p.Y + i'
let nj = p.X + j'
- if ni >= 0 && ni < h && nj >= 0 && nj < w && nmsData.[ni, nj] = 1uy
- then
+ if ni >= 0 && ni < h && nj >= 0 && nj < w && nmsData.[ni, nj] = 1uy then
nmsData.[ni, nj] <- 0uy
- toVisit.Push(Point(nj, ni))
+ toVisit.Push (Point (nj, ni))
edges, xGradient, yGradient
\ No newline at end of file