X-Git-Url: http://git.euphorik.ch/?p=master-thesis.git;a=blobdiff_plain;f=Parasitemia%2FParasitemia%2FProgram.fs;fp=Parasitemia%2FParasitemia%2FProgram.fs;h=0000000000000000000000000000000000000000;hp=06059f69a319f3d37e2c254d1a44a47b296faf51;hb=4bfa3cbdc6145e6944f02e24829ab2ef3a851ac1;hpb=48ecdfc43001c444eff6ad442986049384674af2 diff --git a/Parasitemia/Parasitemia/Program.fs b/Parasitemia/Parasitemia/Program.fs deleted file mode 100644 index 06059f6..0000000 --- a/Parasitemia/Parasitemia/Program.fs +++ /dev/null @@ -1,94 +0,0 @@ -module Parasitemia.Main - -open System -open System.IO -open System.Threading - -open Emgu.CV -open Emgu.CV.Structure - -open Config - -type Input = - | File of string - | Dir of string - -type RunningMode = - | CmdLine of Input * string // A file or a directory to process and the output directory. - | Window of string option // An optional path to a file to open can be given in window mode. - -type Arguments = RunningMode * bool - -let parseArgs (args: string[]) : Arguments = - - let output = Array.tryFindIndex ((=) "--output") args - - let runningMode = - match Array.tryFindIndex ((=) "--folder") args, output with - | Some i, Some i_output when i < args.Length - 2 && i_output < args.Length - 2 -> - CmdLine ((Dir args.[i+1]), args.[i_output + 1]) - | _ -> - match Array.tryFindIndex ((=) "--file") args, output with - | Some i, Some i_output when i < args.Length - 2 && i_output < args.Length - 2 -> - CmdLine ((File args.[i+1]), args.[i_output + 1]) - |_ -> - Window (if args.Length > 0 && not (args.[0].StartsWith("--")) then Some args.[0] else None) - - runningMode, Array.exists ((=) "--debug") args - -[] -[] -let main args = - - let e = Ellipse.ellipse2 -11.4 -7.8 -0.169811 -23.75 0.8 -3.885714 -19. 1.5 - - match parseArgs args with - | mode, debug -> - let config = Config(defaultParameters) - - match mode with - | CmdLine (input, output) -> - if debug - then - config.Debug <- DebugOn output - - Directory.CreateDirectory output |> ignore - - use logFile = new StreamWriter(new FileStream(Path.Combine(output, "log.txt"), FileMode.Append, FileAccess.Write)) - Utils.log <- (fun m -> logFile.WriteLine(m)) - Utils.log (sprintf "=== New run : %A %A ===" DateTime.Now (if debug then "[DEBUG]" else "[RELEASE]")) - - let files = match input with - | File file -> [ file ] - | Dir dir -> Directory.EnumerateFiles dir |> List.ofSeq - - use resultFile = new StreamWriter(new FileStream(Path.Combine(output, "results.txt"), FileMode.Append, FileAccess.Write)) - - //try - let images = [ for file in files -> Path.GetFileNameWithoutExtension(FileInfo(file).Name), config.Copy(), new Image(file) ] - - - Utils.logTime "Whole analyze" (fun () -> - let results = ImageAnalysis.doMultipleAnalysis images None - - for id, cells in results do - let config = images |> List.pick (fun (id', config', _) -> if id' = id then Some config' else None) - let total, infected = Utils.countCells cells - fprintf resultFile "File: %s %d %d %.2f (diameter: %A)\n" id total infected (100. * (float infected) / (float total)) config.RBCRadius) - - //Utils.log (sprintf "== File: %A" file) - //with - //| :? IOException as ex -> Utils.log (sprintf "Unable to open the image '%A': %A" file ex) - 0 - - | Window fileToOpen -> - (*let display (window : Views.MainWindow) (img : IImage) = - let imgControl = window.Root.FindName("img") :?> Controls.Image - imgControl.Source <- BitmapSourceConvert.ToBitmapSource(img) - - let log (window : Views.MainWindow) (mess : string) = - let txtLog = window.Root.FindName("txtLog") :?> Controls.TextBlock - txtLog.Text <- txtLog.Text + mess + "\n"*) - - if debug then config.Debug <- DebugOn "." - GUI.Main.run config fileToOpen