X-Git-Url: http://git.euphorik.ch/?a=blobdiff_plain;ds=sidebyside;f=Parasitemia%2FParasitemia%2FParasitesMarker2.fs;fp=Parasitemia%2FParasitemia%2FParasitesMarker2.fs;h=03af2b6e715a25b4d567085459673e91ad5eb73a;hb=84fdf7404133803fdf0dc867a4da68a144975191;hp=0000000000000000000000000000000000000000;hpb=5ac2dedf8ead5275ac216e0b41829ab39c843800;p=master-thesis.git diff --git a/Parasitemia/Parasitemia/ParasitesMarker2.fs b/Parasitemia/Parasitemia/ParasitesMarker2.fs new file mode 100644 index 0000000..03af2b6 --- /dev/null +++ b/Parasitemia/Parasitemia/ParasitesMarker2.fs @@ -0,0 +1,50 @@ +module ParasitesMarker2 + +open System.Drawing + +open Emgu.CV +open Emgu.CV.Structure + +type Result = { + darkStain: Image + stain: Image + infection: Image } + +// Create three binary markers : +// * 'Dark stain' corresponds to the colored pixel, it's independent of the size of the areas. +// * 'Stain' corresponds to the stain around the parasites. +// * 'Infection' corresponds to the parasite. It shouldn't contain thrombocytes. +let find (filteredGreen: Image) (filteredGreenFloat: Image) (kmediansResult: KMedians.Result) (config: Config.Config) : Result * Image * Image = + + // We use the filtered image to find the dark stain. + let { KMedians.fg = fg; KMedians.median_bg = median_bg; KMedians.median_fg = median_fg; KMedians.d_fg = d_fg } = kmediansResult + let darkStain = d_fg.Cmp(median_bg * config.Parameters.darkStainLevel, CvEnum.CmpType.GreaterThan) + darkStain._And(filteredGreenFloat.Cmp(median_fg, CvEnum.CmpType.LessThan)) + + let marker (area: int) (threshold: float) : Image * Image = + let closed = filteredGreen.Copy() + ImgTools.areaClose closed area + let diff = closed - filteredGreen + + let min = ref [| 0. |] + let minLocation = ref <| [| Point() |] + let max = ref [| 0. |] + let maxLocation = ref <| [| Point() |] + diff.MinMax(min, max, minLocation, maxLocation) + + diff._ThresholdBinary((!max).[0] * threshold |> Gray, Gray(255.)) + diff, closed + + let parasitesMarker, filteredGreenWithoutParasites = marker (int config.ParasiteArea) config.Parameters.infectionLevel + let stainMarker, filteredGreenWithoutStain = marker (int config.StainArea) config.Parameters.stainLevel + + { darkStain = darkStain + stain = parasitesMarker + infection = stainMarker }, + filteredGreenWithoutParasites, + filteredGreenWithoutStain + + + + +