// RBC size range in px at scale = 1.0.
minRBCSize = 20.
- maxRBCSize = 40.
+ maxRBCSize = 42.
- doGSigma1 = 1.5
- doGSigma2 = 20.
- doGLowFreqPercentageReduction = 0.75
+ preFilterSigma = 1.5
- darkStainLevel = 0.5
+ factorNbPick = 1.0 // 1.0
+ factorWindowSize = 2.0
+
+ darkStainLevel = 0.4 // Lower -> more sensitive.
stainSigma = 10.
stainLevel = 0.9
stainSpreadRequired = 3.0
infectionSigma = 2.2
- infectionLevel = 0.85
+ infectionLevel = 0.87
infectionPixelsRequired = 1
percentageOfFgValidCell = 0.4
MaxDarkStainRatio = 0.1
- minimumCellArea = 600. * scale ** 2. |> int
+ minimumCellArea = 1000. * scale ** 2. |> int
maxOffcenter = 0.5 }
match mode with
| CmdLine (input, output) ->
- let config = { config with debug = DebugOn output }
- Utils.log <- (fun m -> Console.WriteLine m)
+ let config = if debug then { config with debug = DebugOn output } else config
Directory.CreateDirectory output |> ignore
+ use logFile = new StreamWriter(new FileStream(Path.Combine(output, "log.txt"), FileMode.Append, FileAccess.Write))
+ Utils.log <- (fun m -> logFile.WriteLine(m))
+ Utils.log (sprintf "=== New run : %A %A ===" DateTime.Now (if debug then "[DEBUG]" else "[RELEASE]"))
+
let files = match input with
| File file -> [ file ]
| Dir dir -> Directory.EnumerateFiles dir |> List.ofSeq
- use resultFile = new StreamWriter(new FileStream(Path.Combine(output, "results.txt"), FileMode.Create, FileAccess.Write))
+ use resultFile = new StreamWriter(new FileStream(Path.Combine(output, "results.txt"), FileMode.Append, FileAccess.Write))
for file in files do
try
- let fileInfo = FileInfo(file)
use img = new Image<Bgr, byte>(file)
- let cells = Utils.logTime "Whole analyze" (fun () -> ImageAnalysis.doAnalysis img fileInfo.Name config)
+ Utils.log (sprintf "== File: %A" file)
+
+ let cells = Utils.logTime "Whole analyze" (fun () -> ImageAnalysis.doAnalysis img (Path.GetFileNameWithoutExtension(FileInfo(file).Name)) config)
let total, infected = Utils.countCells cells
fprintf resultFile "File: %s %d %d %.2f\n" file total infected (100. * (float infected) / (float total))
with
- | _ as ex -> Utils.log (sprintf "Unable to open the image '%A': %A" file ex)
+ | :? IOException as ex -> Utils.log (sprintf "Unable to open the image '%A': %A" file ex)
0
| Window ->