let main args =
match parseArgs args with
| mode, debug ->
- let scale = 1.
- let config = {
- debug = if debug then DebugOn "." else DebugOff
+ let config =
+ Config(
+ { scale = 1.
- scale = scale
+ minRbcRadius = -0.35
+ maxRbcRadius = 0.35
- // RBC size range in px at scale = 1.0.
- minRBCSize = 20.
- maxRBCSize = 40.
+ preFilterSigma = 1.5
- doGSigma1 = 1.5
- doGSigma2 = 20.
- doGLowFreqPercentageReduction = 0.75
+ factorNbPick = 1.0
+ factorWindowSize = 2.0
- factorNbPick = 2.0
- factorWindowSize = 1.6
+ darkStainLevel = 0.4 // Lower -> more sensitive.
- darkStainLevel = 0.4 // Lower -> more sensitive.
+ infectionArea = 0.015
+ infectionLevel = 0.2
+ parasitePixelsRequired = 1
- stainSigma = 10.
- stainLevel = 0.9
- stainSpreadRequired = 3.0
+ stainArea = 0.06
+ stainLevel = 0.2
- infectionSigma = 2.2
- infectionLevel = 0.85
- infectionPixelsRequired = 1
+ maxDarkStainRatio = 0.1
- percentageOfFgValidCell = 0.4
-
- MaxDarkStainRatio = 0.1
-
- minimumCellArea = 1200. * scale ** 2. |> int
- maxOffcenter = 0.5 }
+ standardDeviationMaxRatio = 0.65
+ minimumCellArea = 0.5 })
match mode with
| CmdLine (input, output) ->
- let config = { config with debug = DebugOn output }
+ if debug
+ then
+ config.Debug <- DebugOn output
Directory.CreateDirectory output |> ignore
use logFile = new StreamWriter(new FileStream(Path.Combine(output, "log.txt"), FileMode.Append, FileAccess.Write))
Utils.log <- (fun m -> logFile.WriteLine(m))
- Utils.log (sprintf "=== New run : %A ===" DateTime.Now)
+ Utils.log (sprintf "=== New run : %A %A ===" DateTime.Now (if debug then "[DEBUG]" else "[RELEASE]"))
let files = match input with
| File file -> [ file ]
try
use img = new Image<Bgr, byte>(file)
Utils.log (sprintf "== File: %A" file)
- let cells = Utils.logTime "Whole analyze" (fun () -> ImageAnalysis.doAnalysis img (FileInfo(file).Name) config)
+
+ let cells = Utils.logTime "Whole analyze" (fun () -> ImageAnalysis.doAnalysis img (Path.GetFileNameWithoutExtension(FileInfo(file).Name)) config)
let total, infected = Utils.countCells cells
fprintf resultFile "File: %s %d %d %.2f\n" file total infected (100. * (float infected) / (float total))
with
- | _ as ex -> Utils.log (sprintf "Unable to open the image '%A': %A" file ex)
+ | :? IOException as ex -> Utils.log (sprintf "Unable to open the image '%A': %A" file ex)
0
| Window ->
let app = new Application()
let mainWindow = Views.MainWindow()
+ if debug
+ then
+ config.Debug <- DebugOn "."
+
Utils.log <- (fun m -> log mainWindow m)
//display mainWindow img