+module ParasitemiaUI.Main
+
+open System
+open System.IO
+open System.Threading
+
+open Emgu.CV
+open Emgu.CV.Structure
+
+open Logger
+
+open ParasitemiaCore.Utils
+open ParasitemiaCore.Config
+
+type Input =
+ | File of string
+ | Dir of string
+
+type RunningMode =
+ | CmdLine of Input * string // A file or a directory to process and the output directory.
+ | Window of string option // An optional path to a file to open can be given in window mode.
+
+type Arguments = RunningMode * bool
+
+let parseArgs (args: string[]) : Arguments =
+
+ let output = Array.tryFindIndex ((=) "--output") args
+
+ let runningMode =
+ match Array.tryFindIndex ((=) "--folder") args, output with
+ | Some i, Some i_output when i < args.Length - 2 && i_output < args.Length - 2 ->
+ CmdLine ((Dir args.[i+1]), args.[i_output + 1])
+ | _ ->
+ match Array.tryFindIndex ((=) "--file") args, output with
+ | Some i, Some i_output when i < args.Length - 2 && i_output < args.Length - 2 ->
+ CmdLine ((File args.[i+1]), args.[i_output + 1])
+ |_ ->
+ Window (if args.Length > 0 && not (args.[0].StartsWith("--")) then Some args.[0] else None)
+
+ runningMode, Array.exists ((=) "--debug") args
+
+[<EntryPoint>]
+[<STAThread()>]
+let main args =
+ try
+ Log.User("Starting of Parasitemia UI ...")
+
+ let result =
+ match parseArgs args with
+ | mode, debug ->
+ let config = Config(defaultParameters)
+
+ match mode with
+ | CmdLine (input, output) ->
+ if debug
+ then
+ config.Debug <- DebugOn output
+
+ Directory.CreateDirectory output |> ignore
+
+ use logFile = new StreamWriter(new FileStream(Path.Combine(output, "log.txt"), FileMode.Append, FileAccess.Write))
+ Log.AddListener({ new IListener with member this.NewEntry mess severity = logFile.WriteLine(mess) })
+
+ Log.User (sprintf "=== New run : %A %A ===" DateTime.Now (if debug then "[DEBUG]" else "[RELEASE]"))
+
+ let files = match input with
+ | File file -> [ file ]
+ | Dir dir -> Directory.EnumerateFiles dir |> List.ofSeq
+
+ use resultFile = new StreamWriter(new FileStream(Path.Combine(output, "results.txt"), FileMode.Append, FileAccess.Write))
+
+
+ let images = [ for file in files -> Path.GetFileNameWithoutExtension(FileInfo(file).Name), config.Copy(), new Image<Bgr, byte>(file) ]
+
+ Log.LogWithTime("Whole analyze", Severity.USER, (fun () ->
+ let results = ParasitemiaCore.Analysis.doMultipleAnalysis images None
+
+ for id, cells in results do
+ let config = images |> List.pick (fun (id', config', _) -> if id' = id then Some config' else None)
+ let total, infected = countCells cells
+ fprintf resultFile "File: %s %d %d %.2f (diameter: %A)\n" id total infected (100. * (float infected) / (float total)) config.RBCRadius))
+ 0
+
+ | Window fileToOpen ->
+ if debug then config.Debug <- DebugOn "."
+ GUI.run config fileToOpen
+
+ Log.User("Parasitemia UI closed")
+ result
+
+ with
+ | _ as ex ->
+ Log.Fatal("Error: {0}", ex)
+ 1
\ No newline at end of file