1
module Parasitemia.Main
6 open System.Windows.Media
7 open System.Windows.Markup
8 open System.Windows.Shapes
9 open System.Windows.Controls
11 open System.Diagnostics
14 open Emgu.CV.Structure
19 let display (window
: Views.MainWindow) (img
: IImage) =
20 let imgControl = window
.Root.FindName("img") :?> Controls.Image
21 imgControl.Source <- BitmapSourceConvert.ToBitmapSource(img
)
23 let log (window
: Views.MainWindow) (mess
: string) =
24 let txtLog = window
.Root.FindName("txtLog") :?> Controls.TextBlock
25 txtLog.Text <- txtLog.Text + mess
+ "\n"
33 | CmdLine of Input * string
36 type Arguments = RunningMode * bool
38 let parseArgs (args
: string[]) : Arguments =
40 let output = Array.tryFindIndex
((=) "--output") args
43 match Array.tryFindIndex
((=) "--folder") args
, output with
44 | Some i
, Some i_output when i
< args
.Length - 2 && i_output < args
.Length - 2 ->
45 CmdLine ((Dir args
.[i
+1]), args
.[i_output + 1])
47 match Array.tryFindIndex
((=) "--file") args
, output with
48 | Some i
, Some i_output when i
< args
.Length - 2 && i_output < args
.Length - 2 ->
49 CmdLine ((File args.[i
+1]), args.[i_output + 1])
53 runningMode, Array.exists
((=) "--debug") args
58 match parseArgs args with
62 debug
= if debug
then DebugOn "." else DebugOff
66 // RBC size range in px at scale = 1.0.
72 doGLowFreqPercentageReduction
= 0.75
78 stainSpreadRequired
= 3.0
82 infectionPixelsRequired
= 1
84 percentageOfFgValidCell
= 0.4
86 MaxDarkStainRatio = 0.1
88 minimumCellArea
= 600. * scale ** 2. |> int
92 | CmdLine (input
, output) ->
93 let config = { config with debug
= DebugOn output }
95 Directory.CreateDirectory output |> ignore
97 use logFile = new StreamWriter(new FileStream(Path.Combine(output, "log.txt"), FileMode.Append, FileAccess.Write))
98 Utils.log <- (fun m
-> logFile.WriteLine(m
))
99 Utils.log (sprintf
"=== New run : %A ===" DateTime.Now)
101 let files = match input
with
102 | File file
-> [ file
]
103 | Dir dir
-> Directory.EnumerateFiles dir |> List.ofSeq
105 use resultFile = new StreamWriter(new FileStream(Path.Combine(output, "results.txt"), FileMode.Append, FileAccess.Write))
109 use img = new Image<Bgr, byte
>(file
)
110 Utils.log (sprintf
"== File: %A" file
)
111 let cells = Utils.logTime
"Whole analyze" (fun () -> ImageAnalysis.doAnalysis
img (FileInfo(file
).Name) config)
112 let total, infected
= Utils.countCells
cells
113 fprintf
resultFile "File: %s %d %d %.2f\n" file
total infected
(100. * (float infected) / (float total))
115 | _ as ex -> Utils.log (sprintf
"Unable to open the image '%A': %A" file
ex)
119 let app = new Application()
120 let mainWindow = Views.MainWindow()
122 Utils.log <- (fun m
-> log mainWindow m
)
124 //display mainWindow img
125 mainWindow.Root.Show()