From aeb0583fa94d4c8cef1f8b53559ecac76bc1a191 Mon Sep 17 00:00:00 2001 From: Greg Burri Date: Fri, 19 May 2017 00:08:47 +0200 Subject: [PATCH] Define Emgu as a nuget reference for the project WPF --- Documentation/logo.svg | 98 ++++ Parasitemia/Parasitemia.sln | 19 + Parasitemia/ParasitemiaCore/Classifier.fs | 2 +- Parasitemia/ParasitemiaCore/KdTree.fs | 60 --- .../ParasitemiaCore/ParasitemiaCore.fsproj | 2 +- Parasitemia/ParasitemiaCore/Types.fs | 6 +- Parasitemia/ParasitemiaCore/packages.config | 2 +- Parasitemia/ParasitemiaUI/License-LGPL.txt | 506 ++++++++++++++++++ Parasitemia/ParasitemiaUI/OpenTK.dll.config | 25 + .../ParasitemiaUI/ParasitemiaUI.fsproj | 2 +- Parasitemia/ParasitemiaUI/packages.config | 2 +- .../ParasitemiaCore.Tests/AssemblyInfo.fs | 43 ++ .../Tests/ParasitemiaCore.Tests/KdTree.fs | 71 +++ .../ParasitemiaCore.Tests.fsproj | 97 ++++ .../ParasitemiaCore.Tests/packages.config | 12 + Parasitemia/WPF/License-LGPL.txt | 506 ++++++++++++++++++ Parasitemia/WPF/OpenTK.dll.config | 25 + Parasitemia/WPF/WPF.csproj | 39 +- Parasitemia/WPF/app.config | 15 + Parasitemia/WPF/packages.config | 7 + 20 files changed, 1469 insertions(+), 70 deletions(-) create mode 100644 Documentation/logo.svg create mode 100644 Parasitemia/ParasitemiaUI/License-LGPL.txt create mode 100644 Parasitemia/ParasitemiaUI/OpenTK.dll.config create mode 100644 Parasitemia/Tests/ParasitemiaCore.Tests/AssemblyInfo.fs create mode 100644 Parasitemia/Tests/ParasitemiaCore.Tests/KdTree.fs create mode 100644 Parasitemia/Tests/ParasitemiaCore.Tests/ParasitemiaCore.Tests.fsproj create mode 100644 Parasitemia/Tests/ParasitemiaCore.Tests/packages.config create mode 100644 Parasitemia/WPF/License-LGPL.txt create mode 100644 Parasitemia/WPF/OpenTK.dll.config create mode 100644 Parasitemia/WPF/app.config create mode 100644 Parasitemia/WPF/packages.config diff --git a/Documentation/logo.svg b/Documentation/logo.svg new file mode 100644 index 0000000..b65f39b --- /dev/null +++ b/Documentation/logo.svg @@ -0,0 +1,98 @@ + + + + + + + + + + + + + + + + image/svg+xml + + + + + + + + + + diff --git a/Parasitemia/Parasitemia.sln b/Parasitemia/Parasitemia.sln index 9db6b13..ba7560b 100644 --- a/Parasitemia/Parasitemia.sln +++ b/Parasitemia/Parasitemia.sln @@ -11,6 +11,10 @@ Project("{F2A71F9B-5D33-465A-A702-920D77279786}") = "Logger", "Logger\Logger.fsp EndProject Project("{F2A71F9B-5D33-465A-A702-920D77279786}") = "ParasitemiaCore", "ParasitemiaCore\ParasitemiaCore.fsproj", "{0F8A85F4-9328-40C3-B8FF-44FB39CEB01F}" EndProject +Project("{2150E333-8FDC-42A3-9474-1A3956D46DE8}") = "Tests", "Tests", "{1EC5C716-CA52-46FD-A76C-BEF9459E5561}" +EndProject +Project("{F2A71F9B-5D33-465A-A702-920D77279786}") = "ParasitemiaCore.Tests", "Tests\ParasitemiaCore.Tests\ParasitemiaCore.Tests.fsproj", "{2AB542E3-5F90-48CA-9442-32B2780B3E4A}" +EndProject Global GlobalSection(Performance) = preSolution HasPerformanceSessions = true @@ -45,8 +49,23 @@ Global {0F8A85F4-9328-40C3-B8FF-44FB39CEB01F}.DebugGUI|Any CPU.Build.0 = Debug|Any CPU {0F8A85F4-9328-40C3-B8FF-44FB39CEB01F}.Release|Any CPU.ActiveCfg = Release|Any CPU {0F8A85F4-9328-40C3-B8FF-44FB39CEB01F}.Release|Any CPU.Build.0 = Release|Any CPU + {2AB542E3-5F90-48CA-9442-32B2780B3E4A}.Debug|Any CPU.ActiveCfg = Debug|Any CPU + {2AB542E3-5F90-48CA-9442-32B2780B3E4A}.Debug|Any CPU.Build.0 = Debug|Any CPU + {2AB542E3-5F90-48CA-9442-32B2780B3E4A}.DebugGUI|Any CPU.ActiveCfg = Debug|Any CPU + {2AB542E3-5F90-48CA-9442-32B2780B3E4A}.DebugGUI|Any CPU.Build.0 = Debug|Any CPU + {2AB542E3-5F90-48CA-9442-32B2780B3E4A}.Release|Any CPU.ActiveCfg = Release|Any CPU + {2AB542E3-5F90-48CA-9442-32B2780B3E4A}.Release|Any CPU.Build.0 = Release|Any CPU EndGlobalSection GlobalSection(SolutionProperties) = preSolution HideSolutionNode = FALSE EndGlobalSection + GlobalSection(NestedProjects) = preSolution + {2AB542E3-5F90-48CA-9442-32B2780B3E4A} = {1EC5C716-CA52-46FD-A76C-BEF9459E5561} + EndGlobalSection + GlobalSection(Performance) = preSolution + HasPerformanceSessions = true + EndGlobalSection + GlobalSection(Performance) = preSolution + HasPerformanceSessions = true + EndGlobalSection EndGlobal diff --git a/Parasitemia/ParasitemiaCore/Classifier.fs b/Parasitemia/ParasitemiaCore/Classifier.fs index f7c1bbb..36e2851 100644 --- a/Parasitemia/ParasitemiaCore/Classifier.fs +++ b/Parasitemia/ParasitemiaCore/Classifier.fs @@ -112,7 +112,7 @@ let findCells (ellipses : Ellipse list) (parasites : ParasitesMarker.Result) (wi // 2) Remove ellipses touching the edges. let widthF, heightF = float32 width, float32 height for e in ellipses do - if e.isOutside widthF heightF then e.State <- CellState.Removed + if e.IsOutside widthF heightF then e.State <- CellState.Removed // 3) Remove ellipses with a high standard deviation (high contrast). // Obsolete. It was useful when the ellipses result quality wasn't good. diff --git a/Parasitemia/ParasitemiaCore/KdTree.fs b/Parasitemia/ParasitemiaCore/KdTree.fs index 4e20f24..f98cfa2 100644 --- a/Parasitemia/ParasitemiaCore/KdTree.fs +++ b/Parasitemia/ParasitemiaCore/KdTree.fs @@ -90,63 +90,3 @@ type Tree<'a when 'a :> I2DCoords> = (valuesInRegion downRegion part1) @ (valuesInRegion upRegion part2) searchWithRegion this { minX = Single.MinValue; maxX = Single.MaxValue; minY = Single.MinValue; maxY = Single.MaxValue } 1 - -///// Tests. TODO: to put in a unit test. - -type Point (x : float32, y : float32) = - interface I2DCoords with - member this.X = x - member this.Y = y - - override this.ToString () = - sprintf "(%.1f, %.1f)" x y - -// TODO: test with identical X or Y coords -let test () = - let pts = - [ - Point(1.0f, 1.0f) - Point(2.0f, 2.0f) - Point(1.5f, 3.6f) - Point(3.0f, 3.2f) - Point(4.0f, 4.0f) - Point(3.5f, 1.5f) - Point(2.5f, 0.5f) - ] - - let tree = Tree.BuildTree pts - Utils.dprintfn "Tree: %A" tree - - let s1 = tree.Search { minX = 0.0f; maxX = 5.0f; minY = 0.0f; maxY = 5.0f } // All points. - Utils.dprintfn "s1: %A" s1 - - let s2 = tree.Search { minX = 2.8f; maxX = 4.5f; minY = 3.0f; maxY = 4.5f } - Utils.dprintfn "s2: %A" s2 - - let s3 = tree.Search { minX = 2.0f; maxX = 2.0f; minY = 2.0f; maxY = 2.0f } - Utils.dprintfn "s3: %A" s3 - -let test2 () = - let pts = - [ - Point(1.0f, 1.0f) - Point(1.0f, 2.0f) - Point(1.0f, 3.0f) - ] - - let tree = Tree.BuildTree pts - Utils.dprintfn "Tree: %A" tree - - let s1 = tree.Search { minX = 1.0f; maxX = 1.0f; minY = 1.0f; maxY = 1.0f } - Utils.dprintfn "s1: %A" s1 - - let s2 = tree.Search { minX = 1.0f; maxX = 1.0f; minY = 2.0f; maxY = 2.0f } - Utils.dprintfn "s2: %A" s2 - - // This case result is wrong: FIXME - let s3 = tree.Search { minX = 1.0f; maxX = 1.0f; minY = 3.0f; maxY = 3.0f } - Utils.dprintfn "s3: %A" s3 - - let s4 = tree.Search { minX = 0.0f; maxX = 2.0f; minY = 0.0f; maxY = 4.0f } - Utils.dprintfn "s4: %A" s4 - diff --git a/Parasitemia/ParasitemiaCore/ParasitemiaCore.fsproj b/Parasitemia/ParasitemiaCore/ParasitemiaCore.fsproj index 340eb5b..5a14573 100644 --- a/Parasitemia/ParasitemiaCore/ParasitemiaCore.fsproj +++ b/Parasitemia/ParasitemiaCore/ParasitemiaCore.fsproj @@ -111,7 +111,7 @@ - ..\packages\System.ValueTuple.4.3.0\lib\netstandard1.0\System.ValueTuple.dll + ..\packages\System.ValueTuple.4.3.1\lib\netstandard1.0\System.ValueTuple.dll diff --git a/Parasitemia/ParasitemiaCore/Types.fs b/Parasitemia/ParasitemiaCore/Types.fs index f88baf8..c1a635d 100644 --- a/Parasitemia/ParasitemiaCore/Types.fs +++ b/Parasitemia/ParasitemiaCore/Types.fs @@ -29,7 +29,7 @@ type Ellipse (cx : float32, cy : float32, a : float32, b : float32, alpha : floa member this.CutAnHorizontalLine (x : float32) : bool = a ** 2.f + b ** 2.f - 2.f * x ** 2.f + 4.f * x * cy - 2.f * cy ** 2.f - a ** 2.f * cos (2.f * alpha) + b ** 2.f * cos (2.f * alpha) > 0.f - member this.isOutside (width : float32) (height : float32) = + member this.IsOutside (width : float32) (height : float32) = this.Cx < 0.f || this.Cx >= width || this.Cy < 0.f || this.Cy >= height || this.CutAVericalLine 0.f || this.CutAVericalLine width || @@ -67,7 +67,7 @@ type MaybeBuilder () = | None -> None | Some a -> f a - member this.ReturnFrom (x) = x + member this.ReturnFrom x = x member this.TryFinally (body, compensation) = try @@ -85,7 +85,7 @@ type MaybeBuilder () = member this.Zero () = None - member this.Return (x) = + member this.Return x = Some x let maybe = MaybeBuilder() diff --git a/Parasitemia/ParasitemiaCore/packages.config b/Parasitemia/ParasitemiaCore/packages.config index 297d372..91a2fc7 100644 --- a/Parasitemia/ParasitemiaCore/packages.config +++ b/Parasitemia/ParasitemiaCore/packages.config @@ -7,6 +7,6 @@ - + \ No newline at end of file diff --git a/Parasitemia/ParasitemiaUI/License-LGPL.txt b/Parasitemia/ParasitemiaUI/License-LGPL.txt new file mode 100644 index 0000000..84d8640 --- /dev/null +++ b/Parasitemia/ParasitemiaUI/License-LGPL.txt @@ -0,0 +1,506 @@ + GNU LESSER GENERAL PUBLIC LICENSE + Version 2.1, February 1999 + + Copyright (C) 1991, 1999 Free Software Foundation, Inc. + 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA + Everyone is permitted to copy and distribute verbatim copies + of this license document, but changing it is not allowed. + +[This is the first released version of the Lesser GPL. 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See the GNU + Lesser General Public License for more details. + + You should have received a copy of the GNU Lesser General Public + License along with this library; if not, write to the Free Software + Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA + +Also add information on how to contact you by electronic and paper mail. + +You should also get your employer (if you work as a programmer) or your +school, if any, to sign a "copyright disclaimer" for the library, if +necessary. Here is a sample; alter the names: + + Yoyodyne, Inc., hereby disclaims all copyright interest in the + library `Frob' (a library for tweaking knobs) written by James Random Hacker. + + , 1 April 1990 + Ty Coon, President of Vice + +That's all there is to it! + + + + diff --git a/Parasitemia/ParasitemiaUI/OpenTK.dll.config b/Parasitemia/ParasitemiaUI/OpenTK.dll.config new file mode 100644 index 0000000..7098d39 --- /dev/null +++ b/Parasitemia/ParasitemiaUI/OpenTK.dll.config @@ -0,0 +1,25 @@ + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/Parasitemia/ParasitemiaUI/ParasitemiaUI.fsproj b/Parasitemia/ParasitemiaUI/ParasitemiaUI.fsproj index f20a7f9..200460e 100644 --- a/Parasitemia/ParasitemiaUI/ParasitemiaUI.fsproj +++ b/Parasitemia/ParasitemiaUI/ParasitemiaUI.fsproj @@ -143,7 +143,7 @@ - ..\packages\System.ValueTuple.4.3.0\lib\netstandard1.0\System.ValueTuple.dll + ..\packages\System.ValueTuple.4.3.1\lib\netstandard1.0\System.ValueTuple.dll diff --git a/Parasitemia/ParasitemiaUI/packages.config b/Parasitemia/ParasitemiaUI/packages.config index 8a1eccf..89d3dcf 100644 --- a/Parasitemia/ParasitemiaUI/packages.config +++ b/Parasitemia/ParasitemiaUI/packages.config @@ -8,6 +8,6 @@ - + \ No newline at end of file diff --git a/Parasitemia/Tests/ParasitemiaCore.Tests/AssemblyInfo.fs b/Parasitemia/Tests/ParasitemiaCore.Tests/AssemblyInfo.fs new file mode 100644 index 0000000..d448a0d --- /dev/null +++ b/Parasitemia/Tests/ParasitemiaCore.Tests/AssemblyInfo.fs @@ -0,0 +1,43 @@ +namespace ParasitemiaCore.Tests.AssemblyInfo + +open System.Reflection +open System.Runtime.CompilerServices +open System.Runtime.InteropServices + +// General Information about an assembly is controlled through the following +// set of attributes. Change these attribute values to modify the information +// associated with an assembly. +[] +[] +[] +[] +[] +[] +[] +[] + +// Setting ComVisible to false makes the types in this assembly not visible +// to COM components. If you need to access a type in this assembly from +// COM, set the ComVisible attribute to true on that type. +[] + +// The following GUID is for the ID of the typelib if this project is exposed to COM +[] + +// Version information for an assembly consists of the following four values: +// +// Major Version +// Minor Version +// Build Number +// Revision +// +// You can specify all the values or you can default the Build and Revision Numbers +// by using the '*' as shown below: +// [] +[] +[] + +[] + +do + () \ No newline at end of file diff --git a/Parasitemia/Tests/ParasitemiaCore.Tests/KdTree.fs b/Parasitemia/Tests/ParasitemiaCore.Tests/KdTree.fs new file mode 100644 index 0000000..9c9d859 --- /dev/null +++ b/Parasitemia/Tests/ParasitemiaCore.Tests/KdTree.fs @@ -0,0 +1,71 @@ +namespace ParasitemiaCore.Tests + +open Xunit +open Xunit.Abstractions + +open ParasitemiaCore.KdTree + +type Point (x : float32, y : float32) = + interface I2DCoords with + member this.X = x + member this.Y = y + + override this.ToString () = + sprintf "(%.1f, %.1f)" x y + +type KdTreeTests (output : ITestOutputHelper) = + + // TODO: test with identical X or Y coords + [] + member this.test () = + let pts = + [ + Point(1.0f, 1.0f) + Point(2.0f, 2.0f) + Point(1.5f, 3.6f) + Point(3.0f, 3.2f) + Point(4.0f, 4.0f) + Point(3.5f, 1.5f) + Point(2.5f, 0.5f) + ] + + let tree = Tree.BuildTree pts + output.WriteLine (sprintf "Tree: %A" tree) + + let s1 = tree.Search { minX = 0.0f; maxX = 5.0f; minY = 0.0f; maxY = 5.0f } // All points. + output.WriteLine (sprintf "s1: %A" s1) + + let s2 = tree.Search { minX = 2.8f; maxX = 4.5f; minY = 3.0f; maxY = 4.5f } + output.WriteLine (sprintf "s2: %A" s2) + + let s3 = tree.Search { minX = 2.0f; maxX = 2.0f; minY = 2.0f; maxY = 2.0f } + output.WriteLine (sprintf "s3: %A" s3) + + [] + member this.test2 () = + let pts = + [ + Point(1.0f, 1.0f) + Point(1.0f, 2.0f) + Point(1.0f, 3.0f) + ] + + let tree = Tree.BuildTree pts + output.WriteLine (sprintf "Tree: %A" tree) + + let s1 = tree.Search { minX = 1.0f; maxX = 1.0f; minY = 1.0f; maxY = 1.0f } + output.WriteLine (sprintf "s1: %A" s1) + + let s2 = tree.Search { minX = 1.0f; maxX = 1.0f; minY = 2.0f; maxY = 2.0f } + output.WriteLine (sprintf "s2: %A" s2) + + // This case result is wrong: FIXME + let s3 = tree.Search { minX = 1.0f; maxX = 1.0f; minY = 3.0f; maxY = 3.0f } + output.WriteLine (sprintf "s3: %A" s3) + + let s4 = tree.Search { minX = 0.0f; maxX = 2.0f; minY = 0.0f; maxY = 4.0f } + output.WriteLine (sprintf "s4: %A" s4) + + + + diff --git a/Parasitemia/Tests/ParasitemiaCore.Tests/ParasitemiaCore.Tests.fsproj b/Parasitemia/Tests/ParasitemiaCore.Tests/ParasitemiaCore.Tests.fsproj new file mode 100644 index 0000000..dc8cf62 --- /dev/null +++ b/Parasitemia/Tests/ParasitemiaCore.Tests/ParasitemiaCore.Tests.fsproj @@ -0,0 +1,97 @@ + + + + + + Debug + AnyCPU + 2.0 + {2ab542e3-5f90-48ca-9442-32b2780b3e4a} + Library + ParasitemiaCore.Tests + ParasitemiaCore.Tests + v4.5.2 + 4.4.1.0 + true + ParasitemiaCore.Tests + + + + + + true + full + false + false + bin\Debug\ + DEBUG;TRACE + 3 + bin\Debug\ParasitemiaCore.Tests.XML + AnyCPU + + + pdbonly + true + true + bin\Release\ + TRACE + 3 + + + AnyCPU + + + 11 + + + $(MSBuildExtensionsPath32)\Microsoft\VisualStudio\v$(VisualStudioVersion)\FSharp\Microsoft.FSharp.Targets + + + + + + + + + + ..\packages\FSharp.Core.4.1.17\lib\net45\FSharp.Core.dll + + + + + ..\..\packages\System.ValueTuple.4.3.1\lib\netstandard1.0\System.ValueTuple.dll + + + ..\..\packages\xunit.abstractions.2.0.1\lib\net35\xunit.abstractions.dll + + + ..\..\packages\xunit.assert.2.2.0\lib\netstandard1.1\xunit.assert.dll + + + ..\..\packages\xunit.extensibility.core.2.2.0\lib\netstandard1.1\xunit.core.dll + + + ..\..\packages\xunit.extensibility.execution.2.2.0\lib\net452\xunit.execution.desktop.dll + + + + + ParasitemiaCore + {0f8a85f4-9328-40c3-b8ff-44fb39ceb01f} + True + + + + + This project references NuGet package(s) that are missing on this computer. Use NuGet Package Restore to download them. For more information, see http://go.microsoft.com/fwlink/?LinkID=322105. The missing file is {0}. + + + + + \ No newline at end of file diff --git a/Parasitemia/Tests/ParasitemiaCore.Tests/packages.config b/Parasitemia/Tests/ParasitemiaCore.Tests/packages.config new file mode 100644 index 0000000..63ccec1 --- /dev/null +++ b/Parasitemia/Tests/ParasitemiaCore.Tests/packages.config @@ -0,0 +1,12 @@ + + + + + + + + + + + + \ No newline at end of file diff --git a/Parasitemia/WPF/License-LGPL.txt b/Parasitemia/WPF/License-LGPL.txt new file mode 100644 index 0000000..84d8640 --- /dev/null +++ b/Parasitemia/WPF/License-LGPL.txt @@ -0,0 +1,506 @@ + GNU LESSER GENERAL PUBLIC LICENSE + Version 2.1, February 1999 + + Copyright (C) 1991, 1999 Free Software Foundation, Inc. + 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA + Everyone is permitted to copy and distribute verbatim copies + of this license document, but changing it is not allowed. + +[This is the first released version of the Lesser GPL. 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Here is a sample; alter the names: + + Yoyodyne, Inc., hereby disclaims all copyright interest in the + library `Frob' (a library for tweaking knobs) written by James Random Hacker. + + , 1 April 1990 + Ty Coon, President of Vice + +That's all there is to it! + + + + diff --git a/Parasitemia/WPF/OpenTK.dll.config b/Parasitemia/WPF/OpenTK.dll.config new file mode 100644 index 0000000..7098d39 --- /dev/null +++ b/Parasitemia/WPF/OpenTK.dll.config @@ -0,0 +1,25 @@ + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/Parasitemia/WPF/WPF.csproj b/Parasitemia/WPF/WPF.csproj index 862c74a..c6f6f53 100644 --- a/Parasitemia/WPF/WPF.csproj +++ b/Parasitemia/WPF/WPF.csproj @@ -1,5 +1,6 @@  + Debug @@ -11,6 +12,8 @@ WPF v4.0 512 + + true @@ -33,26 +36,58 @@ AnyCPU - - ..\..\..\Emgu\emgucv-windesktop 3.1.0.2282\bin\Emgu.CV.World.dll + + ..\packages\EmguCV.3.1.0.1\lib\net30\Emgu.CV.UI.dll + + + ..\packages\EmguCV.3.1.0.1\lib\net30\Emgu.CV.UI.GL.dll + + + ..\packages\EmguCV.3.1.0.1\lib\net30\Emgu.CV.World.dll + + + ..\packages\OpenTK.2.0.0\lib\net20\OpenTK.dll + + + ..\packages\OpenTK.GLControl.1.1.2349.61993\lib\NET40\OpenTK.GLControl.dll + + + ..\packages\ZedGraph.5.1.7\lib\net35-Client\ZedGraph.dll + + + + + + + + + + + + This project references NuGet package(s) that are missing on this computer. Use NuGet Package Restore to download them. For more information, see http://go.microsoft.com/fwlink/?LinkID=322105. The missing file is {0}. + + + + +