X-Git-Url: http://git.euphorik.ch/?p=master-thesis.git;a=blobdiff_plain;f=Parasitemia%2FParasitemiaUI%2FPiaZ.fs;h=92ebbe0f5161511c71a04cfded92d5bcaf2681fd;hp=92397be46d9df87547913dd2cb1aa6c990d6d083;hb=2d712781def419c9acc98368f7102b19b064f16d;hpb=c4a76a01f62568c6353396ff85551a3151fc5236

diff --git a/Parasitemia/ParasitemiaUI/PiaZ.fs b/Parasitemia/ParasitemiaUI/PiaZ.fs
index 92397be..92ebbe0 100644
--- a/Parasitemia/ParasitemiaUI/PiaZ.fs
+++ b/Parasitemia/ParasitemiaUI/PiaZ.fs
@@ -18,29 +18,32 @@ let extension = ".piaz"
 let filter = "PIA|*.piaz"
 
 // Information associated to a document.
-type JSONInformation = {
-    patientID: string
-    fileVersion: int
-}
+type JSONInformation =
+    {
+        patientID : string
+        fileVersion : int
+    }
 
 // Information associated to each images.
-type JSONSourceImage = {
-    num: int
-    name: string
-
-    RBCRadius: float32 // The RBC Radius found by granulometry.
-    parameters: ParasitemiaCore.Config.Parameters
-    dateLastAnalysis: DateTime
-    rbcs: RBC List
-
-    healthyRBCBrightness: float32 // 0 to 1.
-    infectedRBCBrightness: float32 // 0 to 1.
-}
-
-type DocumentData = {
-    patientID: string
-    images: SourceImage list
-}
+type JSONSourceImage =
+    {
+        num : int
+        name : string
+
+        RBCRadius : float32 // The RBC Radius found by granulometry.
+        parameters : ParasitemiaCore.Config.Parameters
+        dateLastAnalysis : DateTime
+        rbcs : RBC List
+
+        healthyRBCBrightness : float32 // 0 to 1.
+        infectedRBCBrightness : float32 // 0 to 1.
+    }
+
+type DocumentData =
+    {
+        patientID : string
+        images : SourceImage list
+    }
 
 let mainEntryName = "info.json"
 let imageExtension = ".tiff"
@@ -52,37 +55,41 @@ let currentFileVersion = 2
 /// <param name="filePath"></param>
 /// <param name="data"></param>
 /// <exception cref="System.IOException">If the file cannot be written</exception>
-let save (filePath: string) (data: DocumentData) =
-    use file = ZipFile.Open(filePath, ZipArchiveMode.Update)
+let save (filePath : string) (data : DocumentData) =
+    use file = ZipFile.Open (filePath, ZipArchiveMode.Update)
 
     for e in List.ofSeq file.Entries do // 'ofSeq' to not iterate a collection currently modified.
-        e.Delete()
+        e.Delete ()
 
     // Main JSON file.
-    let mainEntry = file.CreateEntry(mainEntryName, CompressionLevel.Fastest)
-    use mainEntryWriter = new StreamWriter(mainEntry.Open())
-    mainEntryWriter.Write(JsonConvert.SerializeObject({ patientID = data.patientID; fileVersion = currentFileVersion }))
+    let mainEntry = file.CreateEntry (mainEntryName, CompressionLevel.Fastest)
+    use mainEntryWriter = new StreamWriter (mainEntry.Open ())
+    mainEntryWriter.Write (JsonConvert.SerializeObject ({ patientID = data.patientID; fileVersion = currentFileVersion }))
 
     // Write each images and the associated information.
     for srcImg in data.images do
         let imgFilename = (string srcImg.num) + imageExtension
-        let imgEntry = file.CreateEntry(imgFilename, CompressionLevel.NoCompression) // FIXME: It seems a compression is applied to this file despite of the 'NoCompression' flag.
-        srcImg.img.ToBitmap().Save(imgEntry.Open(), System.Drawing.Imaging.ImageFormat.Tiff)
-
-        let imgJSONEntry = file.CreateEntry(imgFilename + ".json", CompressionLevel.Fastest)
-        use imgJSONFileWriter = new StreamWriter(imgJSONEntry.Open())
-        imgJSONFileWriter.Write(
-            JsonConvert.SerializeObject(
-                { num = srcImg.num
-                  name = srcImg.name
-                  RBCRadius = srcImg.config.RBCRadius.Pixel
-                  parameters = srcImg.config.Parameters
-                  dateLastAnalysis = srcImg.dateLastAnalysis
-                  rbcs = srcImg.rbcs
-                  healthyRBCBrightness = srcImg.healthyRBCBrightness
-                  infectedRBCBrightness = srcImg.infectedRBCBrightness }))
-
-let updateDocumentData (fromVersion: int) (toVersion: int) (data: DocumentData) : DocumentData =
+        let imgEntry = file.CreateEntry (imgFilename, CompressionLevel.NoCompression) // FIXME: It seems a compression is applied to this file despite of the 'NoCompression' flag.
+        srcImg.img.ToBitmap().Save (imgEntry.Open (), System.Drawing.Imaging.ImageFormat.Tiff)
+
+        let imgJSONEntry = file.CreateEntry (imgFilename + ".json", CompressionLevel.Fastest)
+        use imgJSONFileWriter = new StreamWriter (imgJSONEntry.Open ())
+        imgJSONFileWriter.Write (
+            JsonConvert.SerializeObject (
+                {
+                    num = srcImg.num
+                    name = srcImg.name
+                    RBCRadius = srcImg.config.RBCRadius.Pixel
+                    parameters = srcImg.config.Parameters
+                    dateLastAnalysis = srcImg.dateLastAnalysis
+                    rbcs = srcImg.rbcs
+                    healthyRBCBrightness = srcImg.healthyRBCBrightness
+                    infectedRBCBrightness = srcImg.infectedRBCBrightness
+                }
+            )
+        )
+
+let updateDocumentData (fromVersion : int) (toVersion : int) (data : DocumentData) : DocumentData =
     for v in fromVersion + 1 .. toVersion do
         match v with
         | 1 -> // Version 0 -> 1 : set initial brightness for rbc.
@@ -95,32 +102,46 @@ let updateDocumentData (fromVersion: int) (toVersion: int) (data: DocumentData)
 /// </summary>
 /// <param name="filePath"></param>
 /// <exception cref="System.IOException">If the file cannot be read</exception>
-let load (filePath: string) : DocumentData =
-    use file = ZipFile.Open(filePath, ZipArchiveMode.Read)
+let load (filePath : string) (defaultConfig : ParasitemiaCore.Config.Config) : DocumentData =
+    use file = ZipFile.Open (filePath, ZipArchiveMode.Read)
 
-    let mainEntry = file.GetEntry(mainEntryName)
-    use mainEntryReader = new StreamReader(mainEntry.Open())
-    let info = JsonConvert.DeserializeObject<JSONInformation>(mainEntryReader.ReadToEnd())
+    let mainEntry = file.GetEntry (mainEntryName)
+    use mainEntryReader = new StreamReader (mainEntry.Open ())
+    let info = JsonConvert.DeserializeObject<JSONInformation> (mainEntryReader.ReadToEnd ())
 
     updateDocumentData info.fileVersion currentFileVersion
-        { patientID = info.patientID
-          images = [ let mutable imgNum = 0
-                     for imgEntry in file.Entries do
-                        if imgEntry.Name.EndsWith(imageExtension)
-                        then
-                            use bitmap = new System.Drawing.Bitmap(imgEntry.Open(), false)
-                            let img = new Image<Bgr, byte>(bitmap)
+        {
+            patientID = info.patientID
+            images =
+                [
+                    let mutable imgNum = 0
+                    for imgEntry in file.Entries do
+                        if imgEntry.Name.EndsWith (imageExtension) then
+                            use bitmap = new System.Drawing.Bitmap (imgEntry.Open (), false)
+                            let img = new Image<Bgr, byte> (bitmap)
                             imgNum <- imgNum + 1
-                            let imgJSONEntry = file.GetEntry(imgEntry.Name + ".json")
-                            use imgJSONFileReader = new StreamReader(imgJSONEntry.Open())
-                            let imgInfo = JsonConvert.DeserializeObject<JSONSourceImage>(imgJSONFileReader.ReadToEnd())
-                            let config = ParasitemiaCore.Config.Config(imgInfo.parameters)
+                            let imgJSONEntry = file.GetEntry (imgEntry.Name + ".json")
+                            use imgJSONFileReader = new StreamReader (imgJSONEntry.Open ())
+                            let imgInfo = JsonConvert.DeserializeObject<JSONSourceImage> (imgJSONFileReader.ReadToEnd ())
+
+                            let config = defaultConfig.Copy ()
+                            config.Parameters <-
+                                {
+                                    ParasitemiaCore.Config.defaultParameters with
+                                        resolution = imgInfo.parameters.resolution
+                                }
+
                             config.SetRBCRadius imgInfo.RBCRadius
-                            yield { num = imgNum
+                            yield
+                                {
+                                    num = imgNum
                                     name = imgInfo.name
                                     config = config
                                     dateLastAnalysis = imgInfo.dateLastAnalysis
                                     img = img
                                     rbcs = imgInfo.rbcs
                                     healthyRBCBrightness = imgInfo.healthyRBCBrightness
-                                    infectedRBCBrightness = imgInfo.infectedRBCBrightness } ] }
\ No newline at end of file
+                                    infectedRBCBrightness = imgInfo.infectedRBCBrightness
+                                }
+                ]
+        }
\ No newline at end of file