module Parasitemia.Main open System open System.IO open System.Threading open Emgu.CV open Emgu.CV.Structure open Config type Input = | File of string | Dir of string type RunningMode = | CmdLine of Input * string | Window type Arguments = RunningMode * bool let parseArgs (args: string[]) : Arguments = let output = Array.tryFindIndex ((=) "--output") args let runningMode = match Array.tryFindIndex ((=) "--folder") args, output with | Some i, Some i_output when i < args.Length - 2 && i_output < args.Length - 2 -> CmdLine ((Dir args.[i+1]), args.[i_output + 1]) | _ -> match Array.tryFindIndex ((=) "--file") args, output with | Some i, Some i_output when i < args.Length - 2 && i_output < args.Length - 2 -> CmdLine ((File args.[i+1]), args.[i_output + 1]) |_ -> Window runningMode, Array.exists ((=) "--debug") args [] [] let main args = match parseArgs args with | mode, debug -> let config = Config(defaultParameters) match mode with | CmdLine (input, output) -> if debug then config.Debug <- DebugOn output Directory.CreateDirectory output |> ignore use logFile = new StreamWriter(new FileStream(Path.Combine(output, "log.txt"), FileMode.Append, FileAccess.Write)) Utils.log <- (fun m -> logFile.WriteLine(m)) Utils.log (sprintf "=== New run : %A %A ===" DateTime.Now (if debug then "[DEBUG]" else "[RELEASE]")) let files = match input with | File file -> [ file ] | Dir dir -> Directory.EnumerateFiles dir |> List.ofSeq use resultFile = new StreamWriter(new FileStream(Path.Combine(output, "results.txt"), FileMode.Append, FileAccess.Write)) //try let images = [ for file in files -> Path.GetFileNameWithoutExtension(FileInfo(file).Name), config.Copy(), new Image(file) ] Utils.logTime "Whole analyze" (fun () -> let results = ImageAnalysis.doMultipleAnalysis images None for id, cells in results do let total, infected = Utils.countCells cells fprintf resultFile "File: %s %d %d %.2f\n" id total infected (100. * (float infected) / (float total))) //Utils.log (sprintf "== File: %A" file) //with //| :? IOException as ex -> Utils.log (sprintf "Unable to open the image '%A': %A" file ex) 0 | Window -> (*let display (window : Views.MainWindow) (img : IImage) = let imgControl = window.Root.FindName("img") :?> Controls.Image imgControl.Source <- BitmapSourceConvert.ToBitmapSource(img) let log (window : Views.MainWindow) (mess : string) = let txtLog = window.Root.FindName("txtLog") :?> Controls.TextBlock txtLog.Text <- txtLog.Text + mess + "\n"*) if debug then config.Debug <- DebugOn "." GUI.Main.run config