X-Git-Url: http://git.euphorik.ch/?a=blobdiff_plain;f=Parasitemia%2FParasitemiaUI%2FProgram.fs;h=5b5edd09c28236eb1bc1ff0f4e6d463f812b5885;hb=HEAD;hp=0f6df128050d7b31be0ea5d03e0e77a7e5de2936;hpb=e8d14548fc5b127970fccb19bad146512f7ac6d9;p=master-thesis.git diff --git a/Parasitemia/ParasitemiaUI/Program.fs b/Parasitemia/ParasitemiaUI/Program.fs index 0f6df12..5b5edd0 100644 --- a/Parasitemia/ParasitemiaUI/Program.fs +++ b/Parasitemia/ParasitemiaUI/Program.fs @@ -12,112 +12,95 @@ open Logger open ParasitemiaCore.Utils open ParasitemiaCore.Config -type Input = - | File of string - | Dir of string - -type RunningMode = - | CmdLine of Input * string // A file or a directory to process and the output directory. - | Window of string option // An optional path to a file to open can be given in window mode. - -type Arguments = RunningMode * bool - -let parseArgs (args : string[]) : Arguments = - - let output = Array.tryFindIndex ((=) "--output") args - - let runningMode = - match Array.tryFindIndex ((=) "--folder") args, output with - | Some i, Some i_output when i < args.Length - 2 && i_output < args.Length - 2 -> - CmdLine ((Dir args.[i + 1]), args.[i_output + 1]) - | _ -> - match Array.tryFindIndex ((=) "--file") args, output with - | Some i, Some i_output when i < args.Length - 2 && i_output < args.Length - 2 -> - CmdLine ((File args.[i + 1]), args.[i_output + 1]) - |_ -> - Window (if args.Length > 0 && not (args.[0].StartsWith("--")) then Some args.[0] else None) - - runningMode, Array.exists ((=) "--debug") args - -let showArgsHelp () = - printfn "Usage of Parasitemia :" - printfn "Non-interactive mode:" - printfn " %s (--folder |--file ) --output [--debug]" System.AppDomain.CurrentDomain.FriendlyName - printfn " --folder : an input folder containing images to analyze" - printfn " --file : an image file to be analyzed" - printfn " --output : a folder to put the results" - printfn " --debug : output more information like intermediate images if set" - - printfn "Interactive mode:" - printfn " %s [] [--debug]" System.AppDomain.CurrentDomain.FriendlyName - printfn " : a PIAZ file to automatically open at startup" - printfn " --debug : output information like intermediate images if set in the current directory" - -[] -extern bool AttachConsole(int dwProcessId) +[] +extern bool AttachConsole (int dwProcessId) [] -[] +[] let main args = // To redirect stdout to the attached console. - AttachConsole(-1) |> ignore // -1 to attach to the parent process. + AttachConsole -1 |> ignore // -1 to attach to the parent process. + + Log.LogDirectory <- Constants.USER_DIRECTORY_LOG + +#if DEBUG + Log.ClearLogFiles () +#endif + + Log.AvoidRepeatingIdenticalMessages <- true if Array.exists (fun e -> e = "--help" || e = "-h") args then - showArgsHelp () + Args.showArgsHelp () 0 else try - Log.Info "Starting of Parasitemia UI ..." + Log.Info ">>>>> Starting of Parasitemia UI ..." + // Log.Info "UI Version: %s" Utils.UIVersion TODO let result = - match parseArgs args with + match Args.parse args with | mode, debug -> - let config = Config(defaultParameters) + let config = Config defaultParameters + +#if DEBUG + Log.DebugLoggingEnabled <- true +#else + Log.DebugLoggingEnabled <- debug +#endif + + Log.Info "Command line arguments: %s" (args |> String.concat " ") + Log.Info "Configuration: %O" config + // Log.Info "Settings from %s:\n%s" Settings.Instance.Path Settings.Instance.AsJson TODO match mode with - | CmdLine (input, output) -> + | Args.CmdLine (input, output) -> if debug then config.Debug <- DebugOn output Directory.CreateDirectory output |> ignore - use logFile = new StreamWriter(new FileStream(Path.Combine(output, "log.txt"), FileMode.Append, FileAccess.Write)) - let listener = { new IListener with member this.NewEntry severity header mess = logFile.WriteLine(header + " : " + mess) } - Log.AddListener(listener) + use logFile = new StreamWriter (new FileStream (Path.Combine(output, "log.txt"), FileMode.Append, FileAccess.Write)) + let listener = { new IListener with member this.NewEntry severity header mess = logFile.WriteLine (header + " : " + mess) } + Log.AddListener listener Log.Info "=== New run : %O %s ===" DateTime.Now (if debug then "[DEBUG]" else "[RELEASE]") - let files = match input with - | File file -> [ file ] - | Dir dir -> Directory.EnumerateFiles dir |> List.ofSeq - - use resultFile = new StreamWriter(new FileStream(Path.Combine(output, "results.txt"), FileMode.Append, FileAccess.Write)) - - let images = [ for file in files -> Path.GetFileNameWithoutExtension(FileInfo(file).Name), config.Copy(), new Image(file) ] - - Log.LogWithTime Severity.INFO (fun () -> - match ParasitemiaCore.Analysis.doMultipleAnalysis images None with - | Some results -> - for id, cells in results do - let config, img = images |> List.pick (fun (id', config', img') -> if id' = id then Some (config', img') else None) - img.Dispose() - let total, infected = countCells cells - fprintf resultFile "File: %s %d %d %.2f (diameter: %O)\n" id total infected (100. * (float infected) / (float total)) config.RBCRadius - | None -> - fprintf resultFile "Analysis aborted" - Some ()) "Whole analyze" |> ignore - - Log.RmListener(listener) + let files = + match input with + | Args.File file -> [ file ] + | Args.Dir dir -> Directory.EnumerateFiles dir |> List.ofSeq + + use resultFile = new StreamWriter (new FileStream (Path.Combine (output, "results.txt"), FileMode.Append, FileAccess.Write)) + + let images = [ for file in files -> Path.GetFileNameWithoutExtension (FileInfo(file).Name), config.Copy (), new Image (file) ] + + Log.LogWithTime Types.Severity.INFO ( + fun () -> + match ParasitemiaCore.Analysis.doMultipleAnalysis images None with + | Some results -> + for id, result in results do + let config, img = images |> List.pick (fun (id', config', img') -> if id' = id then Some (config', img') else None) + img.Dispose () + let total, infected = countCells result.Cells + fprintf resultFile "File: %s %d %d %.2f (diameter: %O)\n" id total infected (100. * (float infected) / (float total)) config.RBCRadius + | None -> + fprintf resultFile "Analysis aborted" + Some () + ) "Whole analyze" |> ignore + + Log.RemoveListener listener 0 - | Window fileToOpen -> + | Args.Window fileToOpen -> if debug then config.Debug <- DebugOn "." GUI.run config fileToOpen - Log.Info "Parasitemia UI closed" + Log.Info "<<<<< Parasitemia UI closed" + Log.Close () result with | ex -> Log.Fatal "Error: %A" ex + Log.Close () 1 \ No newline at end of file