X-Git-Url: http://git.euphorik.ch/?a=blobdiff_plain;f=Parasitemia%2FParasitemia%2FMainAnalysis.fs;h=5ee68865bac7a8f6f92e88081d25f198243aaa31;hb=999a48b8eb25c92e4403c9280fd4fe68f9bc4b7b;hp=ec2aabb9953f8ef789f0ac98b92289128191381b;hpb=044b0ae69df3ac565432545b2fa934589016f9bd;p=master-thesis.git diff --git a/Parasitemia/Parasitemia/MainAnalysis.fs b/Parasitemia/Parasitemia/MainAnalysis.fs index ec2aabb..5ee6886 100644 --- a/Parasitemia/Parasitemia/MainAnalysis.fs +++ b/Parasitemia/Parasitemia/MainAnalysis.fs @@ -3,6 +3,8 @@ open System open System.Drawing +open FSharp.Collections.ParallelSeq + open Emgu.CV open Emgu.CV.Structure @@ -13,17 +15,19 @@ open Types let doAnalysis (img: Image) (name: string) (config: Config) : Cell list = - let scaledImg = if config.Parameters.scale = 1.0 then img else img.Resize(config.Parameters.scale, CvEnum.Inter.Area) - - use green = scaledImg.Item(1) + use green = img.Item(1) let greenFloat = green.Convert() let filteredGreen = gaussianFilter greenFloat (float config.Parameters.preFilterSigma) logTime "areaOpen 1" (fun () -> ImgTools.areaOpenF filteredGreen config.Parameters.initialAreaOpen) - config.RBCRadius <- logTime "Granulometry" (fun() -> Granulometry.findRadius (filteredGreen.Convert()) (10, 100) 0.3 |> float32) + let r1 = logTime "Granulometry (morpho)" (fun() -> Granulometry.findRadiusByClosing (filteredGreen.Convert()) (10, 80) 0.5 |> float32) + // let r2 = logTime "Granulometry (area)" (fun() -> Granulometry.findRadiusByAreaClosing filteredGreen (10, 80) |> float32) + // log (sprintf "r1: %A, r2: %A" r1 r2) + config.RBCRadius <- r1 let secondAreaOpen = int <| config.RBCArea / 3.f + if secondAreaOpen > config.Parameters.initialAreaOpen then logTime "areaOpen 2" (fun () -> ImgTools.areaOpenF filteredGreen secondAreaOpen) @@ -58,7 +62,7 @@ let doAnalysis (img: Image) (name: string) (config: Config) : Cell li drawEllipses imgAllEllipses allEllipses (Bgr(0.0, 240.0, 240.0)) 0.05 saveImg imgAllEllipses (buildFileName " - ellipses - all.png") - let imgEllipses = img.Copy() + let imgEllipses = filteredGreenWhitoutStain.Convert() drawEllipses imgEllipses ellipses (Bgr(0.0, 240.0, 240.0)) 1.0 saveImg imgEllipses (buildFileName " - ellipses.png") @@ -81,11 +85,21 @@ let doAnalysis (img: Image) (name: string) (config: Config) : Cell li saveImg green (buildFileName " - green.png") - use blue = scaledImg.Item(0) + use blue = img.Item(0) saveImg blue (buildFileName " - blue.png") - use red = scaledImg.Item(2) + use red = img.Item(2) saveImg red (buildFileName " - red.png") | _ -> () cells + + +let doMultipleAnalysis (imgs: (string * Image) list) (config : Config) : (string * Cell list) list = + let nbConcurrentTaskLimit = 4 + let n = Environment.ProcessorCount + + imgs + |> PSeq.map (fun (id, img) -> id, doAnalysis img id (config.Copy())) + |> PSeq.withDegreeOfParallelism (if n > nbConcurrentTaskLimit then nbConcurrentTaskLimit else n) + |> PSeq.toList \ No newline at end of file